rs33347599 SNP Detail

Summary

• ID
  rs33347599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:67394801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGGTCAACT GGCTGAAGAG GAGGAAGGCA CAGAAAACAG CAAAGGTCTG AATATTCTCT
  ATACTGAAAA CGTGGTAATA GTAGGCAAGT CTGTTGCATA GTGAGCATCT TCTTTTTCTA
  AATGGTAACA AGTCCAAGAA GTTTGTGCAT GGCTTGTTCT GGAAATCAAA TAATAATTCT
  CACTCTGTCT GTCTGTCTGT CTCTCTCTCT CTCTCTCTCT CCCCCCCTTT CTTCTCTCTT
  ATTTTTCTCC CTTCCCTCCC TCTCTCCCTC CCTCTCTTCC TTTCTAAAAA GGTAAATGAA
  R
  AAAAGAGTGG TGTTGATTGC AAAAACAATC GAGCCCCTTA ATAACTAGCA ACATGAATAA
  CAGCATAGAA ATAAAAAGAA AGGATCATAC CGAGTAACAA AGTCATTTTT ATCAGAAAAT
  GATGTAGCTA TGATTTTTTT CTTTTAAAAA CACTCACAAA AAGCATTGTG AGGTGACTTT
  TACTGTCTCC ATTGGAGAAC AAGGGTCATT TGGAGACTGT CCCTTTCTTC TACAAGCCTT
  TGTGTAAACA GTTTTAATTT TGTTTTCCTT GTTTCTAGAA ATTAAGTGCG GAAGCTTTTA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45267456	mCV22605801	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33347599					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67394801 () rs orientation: forward

Symbol	Name	Function Class
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	1414 bp upstream
Cpgi11705	CpG island 11705	664 bp proximal
Rr558220	regulatory region 558220	410 bp proximal
Rr558221	regulatory region 558221	1426 bp proximal
Tssr18010	transcription start site region 18010	1223 bp upstream