rs33346576 SNP Detail

Summary

• ID
  rs33346576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:67394574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA ATAGTAGGCA AGTCTGTTGC
  R
  TAGTGAGCAT CTTCTTTTTC TAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45267245	mCV22605790	ABI	CRAMUS_MOUSE	f	SNP	A		G	A
ss146721148	ENSMUSSNP444044	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G	A
ss320326793	CHEV_2_67402287	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33346576					SNP	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67394574 () rs orientation: forward

Symbol	Name	Function Class
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	1641 bp upstream
Cpgi11705	CpG island 11705	891 bp proximal
Rr558220	regulatory region 558220	637 bp proximal
Rr558221	regulatory region 558221	1653 bp proximal
Tssr18010	transcription start site region 18010	1450 bp upstream