rs33346476 SNP Detail

Summary

• ID
  rs33346476
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9098950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAACTGG ATCAAAATGT
  ACATGGTTGA AAATCTATCC TTTATTATTT TCAGCAACAA CTAATTTGAA AGTATGGTTG
  GAAATACACA AGCCAGAGAT TTCAAAGTGA CATTTCTCTT CACTTACGAG TCATATCCCA
  GGCACAGTGT TTCCATAACC TTAATATATC TGTGACATTT GTTTGAGAAT GCTTGCTCTG
  K
  GGTTCTTCAT TTTGAACTCC CTGTCTTTGT GTATATAATT CTATTTCTTA TTCACATGTT
  ACATTTTTCA GAGGTAGAGT ATTTTTAAAT TTGCTTAATA TATCTTACGA AGGCTACTCT
  CATGTCTGAG TGGCAGAAAC TTCTTGAACT AAAGGATAGG ATTTCAGGAT GTTATAAAGG
  TTCTAGTACA GAGAACCCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss47787074	NES11667780	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs33346476					SNP	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787074	NES11667780	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9098950 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	Intron
Rr626465	regulatory region 626465	1243 bp distal