rs33345620 SNP Detail

Summary

• ID
  rs33345620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9097553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATTTCTG TAATTATCTT
  CATTCCACTG AACTTTAATC TGTTTGTGAA TTTATTCTCA AATAAATTCT CAGACTCGTC
  TTCCATCTGG CAATATGGCA TGCTTTGGCT GGACTGCTTA TATTTCAAGG ATCTTCTTTT
  GTATATTAAA TAAAAGGATA TGTGTACATC ACATATGTTG GAACATTTGC AATTAGTTGG
  Y
  ATTACTCTCT TAAGTGACTG GGCAGGAGAG GCAGACTGCC AGCCTTGGCA ATCTTTTCAA
  ATTCCTTCTC ATGCCAATTT GCAATTTGTG ATGGAGCTAC ATTTTTATCA GGAGGATTAT
  ATTGAGTTTT GGAAATGACT ATTTCTTCAA GTGACTAGGT GGTTTCTCAG CTAAAATTAT
  GATAATGACT TATTCCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47787066	NES11667817	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33345620					SNP	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787066	NES11667817	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9097553 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	Intron
Rr626465	regulatory region 626465	within coordinates
Tssr54933	transcription start site region 54933	1158 bp downstream