rs33345614 SNP Detail

Summary

• ID
  rs33345614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9096604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAGTGTT CAAAGGCTGG
  AAAATAGGTC TATATAATAT AATATTTTCA CATAGCTTTT GTCGGGACTG GTCTTTTTTT
  TTTTTTCAAA CATCATTTTG TTTTATCAGT GTCTTTTAAA ATCGTTCATC TGAACTGCTT
  ATATATTTCT ATGCCCCTTT CTTTTGTGGT TTAAAAATAT AACCAGATGA ATTTCCTGTT
  Y
  ATGCTTTTGG GTACCAATAT ATAAATAATT TAATCTCCTC ATAGGTGAAC GTATCTACCT
  GTGATGTTCA TACTGGGACA GTCTTTTTTT TTAATTTATT TTTTTATTAG GTATTTTCCT
  CGTTTACATT TTCAATGCTA TCCCAAAAGT CCCCCATACC CACCCCTCCC AATCCCCTAC
  CCACCCACTC CTCCTTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47787060	NES11667901	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T		T		T
ss321738853	CHEV_6_9046604	CHEVERUD	SCREENING_POP	f	SNP									T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs33345614					SNP	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787060	NES11667901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9096604 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	Intron
Rr626465	regulatory region 626465	759 bp proximal
Tssr54933	transcription start site region 54933	209 bp downstream