rs33344846 SNP Detail

Summary

• ID
  rs33344846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9096068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCCAGT GAGCTAAGCA
  TACTTGGAGG AAGGTGTACA GCAAGGTAGG TGTTCCCCTC GAGGGAAAGT ACTTAATGCC
  ACTACAGAGG AGCAGTTCCA TGGGAATGTG ATTAGTTTTA TGGATACCAA CTTGTTCAAT
  ACGCATGTGT AACTTGAGGT GCCTAAGCAT CAATTCCAGG TGGAATCTGT GGTATCCGCA
  Y
  GGAACCTCCC TGAAGGATTG ACACTATATC CCCTTTTGCT GTCTAGCTGT TTTCAGTGTT
  CTTGTAGAAA GGCAGCCTTT CTCAAATTGT TGTTTATCTC AGTGGCCTTA CTATTCAAGA
  TACTACATTG CATCATAAAA TATAACTTAA AATACTGTCA TCTCTTTTAT TTCCCCCTCA
  GATTGACTAC ACAAGAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47787052	NES11667891	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T	T		T	C		T
ss321738845	CHEV_6_9046068	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33344846					SNP	T	T	T	T	C	C	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787052	NES11667891	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9096068 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	Intron
Rr626465	regulatory region 626465	1295 bp proximal
Tssr54933	transcription start site region 54933	321 bp upstream