rs33341731 SNP Detail

Summary

• ID
  rs33341731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165436387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA TCTTCAAAAA GAAACCTTGC
  R
  TTGGGGGGTG GGGGGAGAGC TATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45266374	mCV23022161	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33341731					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165436387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	137 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	565 bp upstream
Rr569954	regulatory region 569954	513 bp distal
Rr569955	regulatory region 569955	75 bp proximal
Rr569956	regulatory region 569956	576 bp proximal
Rr569957	regulatory region 569957	747 bp proximal
Rr569958	regulatory region 569958	924 bp proximal
Tssr21727	transcription start site region 21727	542 bp upstream
Tssr21728	transcription start site region 21728	1704 bp upstream