rs33333552 SNP Detail

Summary

• ID
  rs33333552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7658066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATGAGC CACCTGGGCA
  CAACTTTGTA TTTTATAGAT GTCTTTGAAT GGTAGTCTAA GTCAGTCTCT CCTGGTGGGC
  ACTGCTGTGT ATTTTATAGA TGTCTTTGGA TGGTAGTCTA AGTCAGTCTC TCCTGGTGGG
  CACAGCTGTG TATTTTATAG ATGTCTTTGG ATGGTAGTCT AAGTCAGTCT CTCCTGGTGG
  R
  CACTGCTGTC AGTACTGGGA CTGAGTAAGT CCTCGTTCTA CATTCTCTGA CATGCTTAAT
  ATTTCTGGAA CCAGTAAAAG TTGAATTATT TCCAGTAATT TCCTTAGTAT TTGGCCAATG
  ATCCTTTAAA GAAATGGTAA AATCTAAGGG TAAAGAGAAA GCTTATTCTT AGAGCCATAA
  AAACACTTTC CCTTGCCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47784918	NES11725788	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G		G	G	G	G		A
ss321734392	CHEV_6_7608066	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33333552					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47784918	NES11725788	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7658066 () rs orientation: forward

Symbol	Name	Function Class
Gm35051	predicted gene, 35051	within coordinates
Rr626301	regulatory region 626301	1251 bp distal