rs33333550 SNP Detail

Summary

• ID
  rs33333550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7658035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGCCTCTG CCTCAGAGGT
  GTTGGGATCA AAGGCATGAG CCACCTGGGC ACAACTTTGT ATTTTATAGA TGTCTTTGAA
  TGGTAGTCTA AGTCAGTCTC TCCTGGTGGG CACTGCTGTG TATTTTATAG ATGTCTTTGG
  ATGGTAGTCT AAGTCAGTCT CTCCTGGTGG GCACAGCTGT GTATTTTATA GATGTCTTTG
  R
  ATGGTAGTCT AAGTCAGTCT CTCCTGGTGG GCACTGCTGT CAGTACTGGG ACTGAGTAAG
  TCCTCGTTCT ACATTCTCTG ACATGCTTAA TATTTCTGGA ACCAGTAAAA GTTGAATTAT
  TTCCAGTAAT TTCCTTAGTA TTTGGCCAAT GATCCTTTAA AGAAATGGTA AAATCTAAGG
  GTAAAGAGAA AGCTTATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47784916	NES11725786	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33333550					SNP	A	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47784916	NES11725786	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7658035 () rs orientation: forward

Symbol	Name	Function Class
Gm35051	predicted gene, 35051	within coordinates
Rr626301	regulatory region 626301	1220 bp distal