rs33333548 SNP Detail

Summary

• ID
  rs33333548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7657974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCACCTGGG CACAACTTTG TATTTTATAG ATGTCTTTGA
  ATGGTAGTCT AAGTCAGTCT CTCCTGGTGG GCACTGCTGT GTATTTTATA GATGTCTTTG
  R
  ATGGTAGTCT AAGTCAGTCT CTCCTGGTGG GCACAGCTGT GTATTTTATA GATGTCTTTG
  GATGGTAGTC TAAGTCAGTC TCTCCTGGTG GGCACTGCTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47784914	NES11725785	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33333548					SNP	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47784914	NES11725785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7657974 () rs orientation: forward

Symbol	Name	Function Class
Gm35051	predicted gene, 35051	within coordinates
Rr626301	regulatory region 626301	1159 bp distal