rs33331598 SNP Detail

Summary

• ID
  rs33331598
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75512978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATTGAACA CAGGACCTCT GGAAGAGCAG GCAGTGCTCT
  TAACTGCTAA GCCACCTCTC CAGCCCCCTT TTTTCCCTCT TTTTTTTTTT TGTTTTTTTA
  W
  AAATTCATGT CATGTATGAG TACACTGTAG TTGTCTTCAG ACACACCAGA AGAAGGCATC
  AGATCCCATT GTAGATGGTT GTGAGCCACC ATGTTGCTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45265890	mCV25010607	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs33331598					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75512978 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Nfe2l2	nuclear factor, erythroid derived 2, like 2	Intron
Rr367218	regulatory region 367218	within coordinates
Rr559542	regulatory region 559542	775 bp distal
Rr559543	regulatory region 559543	429 bp distal
Rr559544	regulatory region 559544	141 bp distal
Rr559545	regulatory region 559545	42 bp proximal
Rr559546	regulatory region 559546	128 bp proximal
Tssr18460	transcription start site region 18460	565 bp upstream