rs33329142 SNP Detail

Summary

• ID
  rs33329142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109720078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA TGGAAAAAGA CTACTCCAAA
  R
  GAGCAGAAGA TAGAGATAAA GCTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45265056	mCV23788760	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147205625	ENSMUSSNP6639593	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320456056	CHEV_2_109729890	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33329142					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109720078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12038	CpG island 12038	819 bp proximal
Gm54141	predicted gene, 54141	within coordinates
Lin7c	lin-7 homolog C, crumbs cell polarity complex component	1127 bp upstream
Rr397174	regulatory region 397174	918 bp upstream
Rr562499	regulatory region 562499	376 bp proximal
Rr562500	regulatory region 562500	523 bp proximal
Rr562501	regulatory region 562501	1079 bp proximal
Rr562502	regulatory region 562502	1131 bp proximal
Tssr19303	transcription start site region 19303	1113 bp upstream