rs33318323 SNP Detail

Summary

• ID
  rs33318323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152787527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGCATTT GAGAACTCAC
  CAGTGCACAA GGCAGTTACC CCCGTTGAGG CGGCAGGAGT GGATAAAGTG GACGCATTCT
  TTGAAGTGCT TTTTGCTAGA GAAGAAAGTA ACAGGGAAGG CAGTGCTGTG GGGCAGGTCT
  CTCAGGAGTC TCCTCCCCAC TTATAGACAG CAAAGGATAC ACCTCAGTGC AGCCAGTGTG
  Y
  GCAGTGAATG GGGCCACTGC TTGGAAGCAC GGCACGCAGA GAGATAGGCT GGCCCCATCT
  CTCCGGTGGG TACAAGGAAC AAGGACTTAG GTGTGGGGAG AGTGAGGGTG CCATTCTTCT
  GGGGTCTGCA ACCAGAGGAG CCGGGACAGT AGGTAGCAGT GGGTTGGGAG AAGAGCCCCA
  AAGGGCAAGG CTTCAGCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45263632	mCV23536537	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33318323					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152787527 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12470	CpG island 12470			1785 bp distal
Dusp15	dual specificity phosphatase-like 15			Intron
				Noncoding-Transcript-Variant
Rr567513	regulatory region 567513			1916 bp distal
Rr567514	regulatory region 567514			1806 bp distal
Rr567515	regulatory region 567515			1511 bp proximal