rs33313967 SNP Detail

Summary

• ID
  rs33313967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153081061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCAGAATT TTCTTTTGCC AGGATGGCCA CTTTACTACA
  CCGTCTTCTA TTATAGCTCC ATACCCAAAG TAAAAGTGCT TGCTCAATAC ACCGTATGGC
  Y
  TTTGGAAGCT CCTGTCTGTC GTCTGTAGTG CTGTGATGTA GGTTGCCCTC TGATGAAACT
  ATAGTTTTTA TGGTGTTACA TCATCTCTAT AGAAACTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45263126	mCV23160808	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss147988401	ENSMUSSNP4837254	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33313967					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153081061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	1686 bp proximal
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Rr567587	regulatory region 567587	375 bp distal
Rr567588	regulatory region 567588	within coordinates
Tssr20880	transcription start site region 20880	1774 bp upstream
Tssr20881	transcription start site region 20881	1788 bp upstream
Tssr26894	transcription start site region 26894	1207 bp upstream