rs33309935 SNP Detail

Summary

• ID
  rs33309935
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:104355213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTGACACCT TCACACAGAC AGACACTTGG GCAGAGCACC AATCTAAATA AAGCAAAAAT
  AAATAAATCA TGTTTTTAAA AAGTTACATT GTCACAGTGT CTCTTCATAG CTGTAAAACC
  CTAACAAGGA TATTTATTTA TTTATAAAAC AGGATCTTTA TTATATAGAT CTGGCTGTCC
  TGGAACTCAA AGAAATTGAC CTACCTCTGC CTTCCCTGGA ATTAAAGGCA TATACTACCA
  CACCTGGTCT CACTCGTGTA TATTAAAATA ATATTTGGTG TGTGTGTGTG TGTGTGAGAG
  W
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGG GAGAGAGAGA GAGAGAGGGA
  GAAAGAGAGA GAGAGCATGA CAAAGAACAT AGTTGCCATG GAGGCCAGAA CAGGGTATCC
  AATCTCCTAG AATTTCAGGT ACAGGTGGTT GGGAGCTACT CCACGTGGGT GCAGGGAACG
  CAACCTGGGT TCTCTGGGAG AGCAGCTGAG CATCTATTTG TTTCCACTGT TTCTACTGTT
  CTCTGGTTGG GATCTTGCAA GCTCTGCAAC TTACACAGAG GCAATCCCAC ATTAATTTCT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45262931	mCV23468636	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33309935					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104355213 () rs orientation: forward

Symbol	Name	Function Class
Rr562086	regulatory region 562086	637 bp proximal