rs33301900 SNP Detail

Summary

• ID
  rs33301900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102390363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCTGCT CTATGCCTGC
  CTGGGCATTG TCATGCTCCT GCCTTGATGA TAATGGACTG AACCTCTGAA CCTGTAAGCC
  AGTCCCAATT AAATGTTGTT ACAAAAGGTG CCATGGTAAT GGTATCTGTT CACAGCAGTA
  ATACCCTAAC TAAGACAGTG ACCATATTCC CTTCTAATCT TCTAAGGATA ATGATGGCCA
  Y
  AGTCTGAGCT GGTTAAAACT CTTAAATAAA ACAAATTAAA GTAGTTAGCA CATTTCGTGG
  TAGATAGGAA ATATTCAGGA GATTAAAGTT CTCCTCCAAC TCCTTTCTTT TAAAAATAAT
  CACATATGGC ATACATACTG ACCCTTCTCA CTCCCCACCT CCCCAACATG TCATCTTCCT
  CTCCACAAGT CTCCCTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45261995	mCV23731011	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss320438866	CHEV_2_102400175	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33301900					SNP	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102390363 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr561705	regulatory region 561705	598 bp distal