rs33298505 SNP Detail

Summary

• ID
  rs33298505
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79957331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGCTTGAA TACAAAAGCT CTGAGTCACT TCAGTCAGTA
  AGAATGGCTT TAAAACACTA AACTGGCTGG AGATCATTAA GTGATTCTGT GTAGCAATCG
  K
  TCCAAAAGAA CACAGCGTGT GCACACAGAG ATGTAATCCA CTGTCAACTC AGAAGCTCTG
  CTGCTGAGAG ACCTCATCAC CCCTCTTAGA AACGGCCAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45261730	mCV22743849	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss146789707	ENSMUSSNP1088393	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320362020	CHEV_2_79967144	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33298505					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79957331 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11847	CpG island 11847			1971 bp proximal
Pde1a	phosphodiesterase 1A, calmodulin-dependent			Intron
				Noncoding-Transcript-Variant
Rr373421	regulatory region 373421			within coordinates
Rr560060	regulatory region 560060			within coordinates
Rr560061	regulatory region 560061			1942 bp proximal
Tssr24917	transcription start site region 24917			1953 bp downstream