rs33296661 SNP Detail

Summary

• ID
  rs33296661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164230302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC CAGGCCCCTC CCTTTCACCC
  Y
  GTTCTGACCA CGCCCCGTTT CTGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45261895	mCV22941062	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss148224334	ENSMUSSNP5067531	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320605745	CHEV_2_164214118	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33296661					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164230302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12651	CpG island 12651			870 bp proximal
Matn4	matrilin 4			1011 bp downstream
Rr569592	regulatory region 569592			1049 bp distal
Rr569593	regulatory region 569593			1231 bp distal
Rr569594	regulatory region 569594			583 bp proximal
Rr569595	regulatory region 569595			1196 bp proximal
Slpi	secretory leukocyte peptidase inhibitor			Intron
				Noncoding-Transcript-Variant