rs33296300 SNP Detail

Summary

• ID
  rs33296300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119374041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TATTATATAA TATATTGTAG CAAATTCTGG CTAGCACAGA ATTTGCTACA AAGATCAGCC
  TGGTGTGGAA CTCAAGAGAT CCACCTGCCT CTGCATCCTG GATATTGTGA TTAAAGACTT
  ATATACTCTG TTTGGCTTTC TACACAGGTG ATAGAAATTG AACTTGGGTC TTCACTGAGC
  CATCTTCCTA GCTCCCAAGT GTTTTTATCT GGTAATGTTA ATTATGCTGG GGGCTGAACC
  TAGAGTCTTG CACAGGCTAC TAAGCACTCT ATCACCGAGA TACATCCCTA GCTCCAGTAC
  Y
  GTGTTTTAAA TTTTTAAATT TTTAATTGAT TTTTGTTGTA TTTTTGAAGC AAGGTCTCAC
  TGTGTACTCT TGGCTGAACA GGAACTCTTT GTAGATTGGG AGCACACACA GTGAGTGCTT
  TAGAGTACTA GCATTAAAGA CTTCTGCCAT AATGCTGGGT TACTACTACT ACTGCTGCTA
  CTACTACTGC TACTACTACT ACTACTACTA CTACGTTTTG TATGCATTGA CATTTTATTT
  GCACATATGC CTATGAACTA CATGCAGTTC CCTTGAGGCC AGGAGCTGAA GTTACAAATG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45261793	mCV24933502	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33296300					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119374041 () rs orientation: forward

Symbol	Name	Function Class
Exd1	exonuclease 3'-5' domain containing 1	Intron
Rr563526	regulatory region 563526	1138 bp distal
Rr563527	regulatory region 563527	1245 bp distal