rs33287255 SNP Detail

Summary

• ID
  rs33287255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165585738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGTAGTGTC CCTTAGAGAG AGAAAACTCC CAACACCTTA GTTACCATGC AAAGCGAAAG
  CTCCTTAAAC ATGCAGGGTT TCTCCAGCTC CCCACAGCTC CCAGCCCAGT CCTAGGGCAG
  CAGGCTCTTG TGCTCTGTGT ACCTAATACA GCCCACTAAC TCCCTGTAAA TTAAGTTCTA
  CTGACACACA GCTATTCCCA TGCACTTGCG TGCTGTCTGA AGTTGCTTTT GTGTTGCCCA
  AGAAGGGCTG AGGGGTTTAG TATGGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTATTT
  R
  TGTATAGTGT GTGTGTGTGT ATGTGTGTGT GTGTGTGTGT GTGTGTTGCA TCCTCTTGTG
  GTCTAGAGTG TTCACTCTGA AATCAGATGG CTCAAGTTCA AAGCCAGCCT CATCCCCTTA
  GCTGTATCTG ACAAGTTGCT TGGTCACCGT GTGCCTTCTC AGTTTCAAAG TTGGAATGTG
  CCCATTAACG CGTCACAGGT ATTTAGAAGG GGTCAGCTCT GTGGTAGGCA GATCTTATAA
  AGGAAGTGAA TGGCAGTGTG TCTTACAGAA CTGAGTCTTA AACCACATGT GGTAATGACC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45260699	mCV22645815	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33287255					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165585738 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12714	CpG island 12714			1252 bp distal
Eya2	EYA transcriptional coactivator and phosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr569990	regulatory region 569990			1584 bp distal
Rr569992	regulatory region 569992			1123 bp distal
Rr569993	regulatory region 569993			1029 bp proximal