rs33282760 SNP Detail

Summary

• ID
  rs33282760
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122295766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATATAAC TTTCTGAGTT
  CAAGAAAGAT AATTCAAAAG ATAGGTAGTA GCAACCCTTA CAGAATTCTC CCAACCTCTC
  TCTAAAATGT AAAAGAGCAT TAGCGCACAC AAGAAGCTCA CACAAATTAC TTAATGTGCC
  ACTCACAGTG GATTAACATT TTTTTGGCTT ATCTTGGGGG CTTCTTTTTT CCAAATATTG
  K
  ATCGTAGATG CTTTATTGCA GTATTATGAA ATTTTGCCAG TGCTGGGAAT TGAACCCAAG
  GTCTCACACA TACTCGACAA GCATTCTCAC CACGGAGCCG TATATCTAGC TCTTCTTGTT
  CACCAATGTG CCAGAGTATT TGAATCCCCA ACGTTCCAAC CTCCTCCTCT TTATGATTCT
  CCACAGGCAA GCAACCCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45759766	mCV22536785	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss149186865	ENSMUSSNP4680413	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T		G
ss321668908	CHEV_5_122607712	CHEVERUD	SCREENING_POP	f	SNP				G		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33282760					SNP	G	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122295766 () rs orientation: forward

Symbol	Name	Function Class
Gm73495	predicted gene, 73495	within coordinates
Ppp1cc	protein phosphatase 1 catalytic subunit gamma	575 bp upstream
Rr619790	regulatory region 619790	1475 bp distal
Rr619791	regulatory region 619791	within coordinates
Rr619792	regulatory region 619792	353 bp proximal
Rr619793	regulatory region 619793	664 bp proximal
Tssr48638	transcription start site region 48638	562 bp upstream