rs33281994 SNP Detail

Summary

• ID
  rs33281994
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153083043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGGAGGGA GCCTGAAAGG CTTGTTCCGG TCCCCTGGGC
  ACAGGTCTGA GGTCCGGGGA ACGTTTTCGT CACTACGGGG CCTATCGGGG GCCCGGCTAG
  M
  GCAAAGGGGG CCCCTACTCA GGGGTGTGGG CGACCGCGCT GGGCGGCCCG AAGTGAGGGG
  CGCCGCCGCT CCGAGAGCCG GGCGTGTGGG CGCAGCGCG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45259721	mCV23160843	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs33281994					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153083043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	within coordinates
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Pofut1	protein O-fucosyltransferase 1	410 bp upstream
Rr567588	regulatory region 567588	within coordinates
Rr567589	regulatory region 567589	293 bp proximal
Rr567590	regulatory region 567590	833 bp proximal
Tssr20880	transcription start site region 20880	197 bp downstream
Tssr20881	transcription start site region 20881	180 bp downstream
Tssr20882	transcription start site region 20882	329 bp upstream
Tssr20883	transcription start site region 20883	379 bp upstream
Tssr20884	transcription start site region 20884	484 bp upstream
Tssr26895	transcription start site region 26895	220 bp downstream
Tssr26896	transcription start site region 26896	235 bp downstream
Tssr26897	transcription start site region 26897	279 bp downstream
Tssr26898	transcription start site region 26898	374 bp downstream
Tssr26899	transcription start site region 26899	586 bp downstream