rs33280248 SNP Detail

Summary

• ID
  rs33280248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79526057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAGCTGAG GTTCAGCAAG GCATCAGGAT CAACCTTCAC
  ATCATCCAAA AAGATCTTCA GCTACCGCAT CCCTCATTCG TTCCAAACTC TCAGCATCCA
  Y
  CCCTCTCCTA AAATGTTTCC ATTGATGGTT TCCATTAACA GAAAAGTCAA ACCTATCTCT
  CCCTTGATTC CTTCTTTATG ATTTTTTTTT TTTAGTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45259703	mCV27567448	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146787480	ENSMUSSNP3779285	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320361093	CHEV_2_79535870	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33280248					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79526057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11846	CpG island 11846	319 bp proximal
Rr560025	regulatory region 560025	318 bp proximal