rs33269104 SNP Detail

Summary

• ID
  rs33269104
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:6548594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCAACTT GACTGTTGGG
  CATCAAGCTG TATAGGGCTA TAGGCAGACC CTCCTGAATT TGAGGAGAGC TGTCTCCATT
  GCTACAGTCA CTTCAGGCTT TCTTAGGTTT CTGCCTTGAA GTGCTTTCGG TAGGGAAAGG
  CAGTTGTTTG AGAAAATGAA GCTTCATCTC TGTTGTTTCT CCTCCCTAGT TTCTAAAGCC
  K
  TGGTGACAGA CATCTGTCAT TGGATGCCCA AATGGAGCCC CATTGGATCA GGTTCTCTCC
  AATCACAAGT GGAAATACAC AAAGACACCA AGAAAGAACA ACGGCAAGCC TGGAGTGAGA
  GTCTCTGCTC AAGCTGGGAA AGCTCTGGCT TCTTCCCACC TACGATCCGA TCCTCAGGAA
  GAACGCTAAC GTGAAAGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47776810	NES11717936	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33269104					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47776810	NES11717936	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6548594 () rs orientation: forward

Symbol	Name	Function Class
Rr626249	regulatory region 626249	298 bp distal