rs33267517 SNP Detail

Summary

• ID
  rs33267517
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:6547694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTCGCA TAGAACCATG
  TCTTTCTACT TCTTCTTTTG AGGTTTTCAC GCATTTGAGT TTGGTTTGCC TGACATTTGT
  TAAGAATGTT ACTTGGCCTA GAGGTAACAA TGCTGGATAA AGACAGCTCA CAACCATGAG
  GGCTTTAGAT TTTTGTGAAG AGGGGAAAGA CTCTGTAAAG CAAATCATTT TACTTAAATA
  W
  GCCCAAGGGA TAAAATTAAG GAAAAAAATA TCGAGTAAAA TGCAAAACTA GGGGAGCAAT
  GAACCCAAAC TGAGAGTAAA AGAAGGGATT CCAAGTGAGG ATGGGGTGAA AACGAGAGCG
  ATGATACACT GAGAACAAGG AGGGAAGGCA TGCTCAGGCC ATGGGATCTG CATGAGGAAG
  AGAAGTCCAG AGGCAGGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47776792	NES11717920	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33267517					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47776792	NES11717920	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6547694 () rs orientation: forward

Symbol	Name	Function Class
Rr626249	regulatory region 626249	386 bp proximal