rs33266311 SNP Detail

Summary

• ID
  rs33266311
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119448462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC AGATTCATCT GCCCATAAAA
  M
  TTAACAAAAT GGGTGGGGCT CAGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45257072	mCV22553817	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
ss147337116	ENSMUSSNP6453357	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss320476336	CHEV_2_119443717	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33266311					SNP	A	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119448462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12123	CpG island 12123	within coordinates
Nusap1	nucleolar and spindle associated protein 1	743 bp upstream
Oip5	Opa interacting protein 5	Intron
Rr397233	regulatory region 397233	474 bp upstream
Rr563550	regulatory region 563550	within coordinates
Rr563551	regulatory region 563551	307 bp proximal
Rr563552	regulatory region 563552	478 bp proximal
Rr563553	regulatory region 563553	1981 bp proximal
Tssr19645	transcription start site region 19645	740 bp upstream
Tssr25824	transcription start site region 25824	474 bp downstream