rs33264705 SNP Detail

Summary

• ID
  rs33264705
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69692071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATC TTTGAGGTGA GCTTCTTGGA
  R
  ACTGAGGAGA AGGTACGAAG GGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45257700	mCV25170097	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss320332356	CHEV_2_69699784	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33264705					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69692071 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11719	CpG island 11719			within coordinates
Rr397021	regulatory region 397021			1070 bp downstream
Rr397022	regulatory region 397022			64 bp downstream
Rr558483	regulatory region 558483			155 bp distal
Rr558484	regulatory region 558484			within coordinates
Ssb	small RNA binding exonuclease protection factor La			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr18173	transcription start site region 18173			143 bp downstream
Tssr18174	transcription start site region 18174			92 bp downstream
Tssr18175	transcription start site region 18175			74 bp downstream
Tssr18176	transcription start site region 18176			448 bp upstream