rs33263550 SNP Detail

Summary

• ID
  rs33263550
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156262796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTT CCCCTCCCTG GGATCGGACG
  M
  GCCTGCTCCT GGGCAGCTCG GCTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45257691	mCV23687278	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss148072167	ENSMUSSNP3207896	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33263550					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156262796 () rs orientation: forward

Symbol	Name	Function Class
Epb41l1	erythrocyte membrane protein band 4.1 like 1	mRNA-UTR
Rr568264	regulatory region 568264	within coordinates
Rr568265	regulatory region 568265	247 bp proximal
Tssr21156	transcription start site region 21156	125 bp downstream
Tssr21157	transcription start site region 21157	14 bp downstream
Tssr21158	transcription start site region 21158	162 bp upstream
Tssr21159	transcription start site region 21159	176 bp upstream
Tssr21160	transcription start site region 21160	199 bp upstream
Tssr21161	transcription start site region 21161	207 bp upstream
Tssr21162	transcription start site region 21162	240 bp upstream
Tssr21163	transcription start site region 21163	253 bp upstream
Tssr21164	transcription start site region 21164	286 bp upstream