rs33256616 SNP Detail

Summary

• ID
  rs33256616
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126341504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCCCAACC ATACAGATAG AAACGGCAAA CCAAAAGAGG
  AATTTGAAAG AAAGAAAATG TCATCAAGTC CCGAGCAAAC ACCACATGGT CTGTCTCCTT
  M
  GCCGGGGAAT GGTCCCACCA ACTCACCTCA ACCTGGACCT AACTTTCGCC CTGAGAAACG
  GGGTTTCCCA GCAAGGCAGC TAGACCGAAC AAGTATCCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45256801	mCV23122568	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss147505111	ENSMUSSNP3379015	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33256616					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126341504 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564346	regulatory region 564346	308 bp distal
Rr564347	regulatory region 564347	within coordinates
Rr564348	regulatory region 564348	253 bp proximal
Rr564349	regulatory region 564349	1013 bp proximal
Tssr632	transcription start site region 632	431 bp upstream
Tssr19934	transcription start site region 19934	508 bp downstream
Tssr19935	transcription start site region 19935	391 bp upstream
Tssr26038	transcription start site region 26038	1410 bp upstream
Tssr26039	transcription start site region 26039	97 bp downstream
Tssr26040	transcription start site region 26040	130 bp downstream
Tssr26041	transcription start site region 26041	147 bp downstream
Tssr26042	transcription start site region 26042	192 bp downstream
Tssr26043	transcription start site region 26043	255 bp downstream
Tssr26044	transcription start site region 26044	330 bp downstream
Tssr26045	transcription start site region 26045	708 bp downstream
Tssr26046	transcription start site region 26046	1047 bp downstream