rs33254237 SNP Detail

Summary

• ID
  rs33254237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrMT:1072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGAGATAA GTCGTAACAA GGTAAGCATA CTGGAAAGTG
  TGCTTGGAAT AATCATAGTG TAGCTTAATA TTAAAGCATC TGGCCTACAC CCAGAAGATT
  Y
  CATGACCAAT GAACACTCTG AACTAATCCT AGCCCTAGCC CTACACAAAT ATAATTATAC
  TATTATATAA ATCAAAACAT TTATCCTACT AAAAGTATTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46790886	NES10981281	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33254237					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46790886	NES10981281	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrMT:1072 () rs orientation: forward

Symbol	Name	Function Class
mt-Nd1	mitochondrially encoded NADH dehydrogenase 1	1679 bp upstream
mt-Rnr1	mitochondrially encoded 12S rRNA	48 bp downstream
mt-Rnr2	mitochondrially encoded 16S rRNA	22 bp upstream
mt-Tf	mitochondrially encoded tRNA phenylalanine	1004 bp downstream
mt-Tl1	mitochondrially encoded tRNA leucine 1	1604 bp upstream
mt-Tv	mitochondrially encoded tRNA valine	Noncoding-Transcript-Variant
Tssr160106	transcription start site region 160106	993 bp downstream
Tssr160107	transcription start site region 160107	574 bp downstream
Tssr160108	transcription start site region 160108	469 bp downstream
Tssr160109	transcription start site region 160109	15 bp upstream
Tssr160110	transcription start site region 160110	1060 bp upstream
Tssr160111	transcription start site region 160111	1079 bp upstream
Tssr160112	transcription start site region 160112	1094 bp upstream
Tssr160113	transcription start site region 160113	1128 bp upstream
Tssr160114	transcription start site region 160114	1178 bp upstream
Tssr160115	transcription start site region 160115	1208 bp upstream
Tssr160116	transcription start site region 160116	1250 bp upstream
Tssr160117	transcription start site region 160117	1273 bp upstream
Tssr160118	transcription start site region 160118	1297 bp upstream
Tssr160119	transcription start site region 160119	1319 bp upstream
Tssr160120	transcription start site region 160120	1347 bp upstream
Tssr160121	transcription start site region 160121	1671 bp upstream
Tssr160122	transcription start site region 160122	1781 bp upstream
Tssr160123	transcription start site region 160123	1976 bp upstream
Tssr160124	transcription start site region 160124	1992 bp upstream
Tssr160216	transcription start site region 160216	759 bp upstream
Tssr160217	transcription start site region 160217	705 bp upstream
Tssr160218	transcription start site region 160218	678 bp upstream
Tssr160219	transcription start site region 160219	662 bp upstream
Tssr160220	transcription start site region 160220	626 bp upstream
Tssr160221	transcription start site region 160221	587 bp upstream
Tssr160222	transcription start site region 160222	539 bp upstream
Tssr160223	transcription start site region 160223	491 bp upstream
Tssr160224	transcription start site region 160224	431 bp upstream
Tssr160225	transcription start site region 160225	384 bp upstream
Tssr160226	transcription start site region 160226	331 bp upstream
Tssr160227	transcription start site region 160227	320 bp upstream
Tssr160228	transcription start site region 160228	284 bp upstream
Tssr160229	transcription start site region 160229	226 bp upstream
Tssr160230	transcription start site region 160230	218 bp upstream
Tssr160231	transcription start site region 160231	188 bp upstream
Tssr160232	transcription start site region 160232	149 bp downstream
Tssr160233	transcription start site region 160233	176 bp downstream
Tssr160234	transcription start site region 160234	216 bp downstream
Tssr160235	transcription start site region 160235	255 bp downstream
Tssr160236	transcription start site region 160236	339 bp downstream
Tssr160237	transcription start site region 160237	376 bp downstream
Tssr160238	transcription start site region 160238	427 bp downstream
Tssr160239	transcription start site region 160239	449 bp downstream
Tssr160240	transcription start site region 160240	516 bp downstream
Tssr160241	transcription start site region 160241	570 bp downstream
Tssr160242	transcription start site region 160242	806 bp downstream
Tssr160243	transcription start site region 160243	893 bp downstream
Tssr160244	transcription start site region 160244	952 bp downstream
Tssr160245	transcription start site region 160245	995 bp downstream
Tssr160246	transcription start site region 160246	1095 bp downstream
Tssr160247	transcription start site region 160247	1186 bp downstream
Tssr160248	transcription start site region 160248	1267 bp downstream
Tssr160249	transcription start site region 160249	1288 bp downstream
Tssr160250	transcription start site region 160250	1347 bp downstream
Tssr160251	transcription start site region 160251	1394 bp downstream
Tssr160252	transcription start site region 160252	1772 bp downstream
Tssr160253	transcription start site region 160253	1949 bp downstream