rs33240005 SNP Detail

Summary

• ID
  rs33240005
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153083141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGACCGCGAT CCCGAGGAAG GTTAGCTGCG TGTTATCTGG GTCTCCAGGG AGTCTGGGGG
  GTCCAGACTA GGGGACCCTC AGGCTGAGTT TCCAGGTCTA GGAATGGAGG GAGCCTGAAA
  GGCTTGTTCC GGTCCCCTGG GCACAGGTCT GAGGTCCGGG GAACGTTTTC GTCACTACGG
  GGCCTATCGG GGGCCCGGCT AGAGCAAAGG GGGCCCCTAC TCAGGGGTGT GGGCGACCGC
  GCTGGGCGGC CCGAAGTGAG GGGCGCCGCC GCTCCGAGAG CCGGGCGTGT GGGCGCAGCG
  S
  GACGGCCTCC CGCCCCGCTC CCCACCATCC CCCAGGACCC TCGCCGGCAC TCACTGCGCT
  CGGGACCCCG CGCTGCGGGC CGGGCCGCGC TCGGGCTCCG CCAGGCCCGC TCAGGCCCCG
  GTAGTGGCGG CGGTCGGGCC ATTGTGCGGT GCATTGTGGG AGCCGCGCGA GCGGGCGCTC
  GGGTCGTGGA GGGGGCGGTG CCGCGGGCTC TCTATGGTCC CGCCCGCCCG CGGGCTAGAG
  AGGCCCAGCC GGCGCGCGGG CGGCGCGCGG GGAGCACTGG GAGCGGGGCG GCCACTCGCG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45254502	mCV23160844	ABI	CRAMUS_MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs33240005					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153083141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	within coordinates
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Pofut1	protein O-fucosyltransferase 1	312 bp upstream
Rr567588	regulatory region 567588	within coordinates
Rr567589	regulatory region 567589	195 bp proximal
Rr567590	regulatory region 567590	735 bp proximal
Tssr20880	transcription start site region 20880	295 bp downstream
Tssr20881	transcription start site region 20881	278 bp downstream
Tssr20882	transcription start site region 20882	231 bp upstream
Tssr20883	transcription start site region 20883	281 bp upstream
Tssr20884	transcription start site region 20884	386 bp upstream
Tssr26895	transcription start site region 26895	122 bp downstream
Tssr26896	transcription start site region 26896	137 bp downstream
Tssr26897	transcription start site region 26897	181 bp downstream
Tssr26898	transcription start site region 26898	276 bp downstream
Tssr26899	transcription start site region 26899	488 bp downstream