rs33239869 SNP Detail

Summary

• ID
  rs33239869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5292914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTTGGC AAGAGGCATC
  ACTAATATAA TTATCCACTT CAACATTCTA GAGATTAAAA AAAATAAATA CACAAATATT
  AAGAATTGGA GTTAGTGTAT ATATCAGAAT GCCCTAATGG TCCAAGCAAG CATGGATAGT
  CAGACAGGAG GCTGGGTTAC TAGCATGTTT ATGTGTGGGG AACATGATGC TTATGTCTGC
  Y
  GCTTGGCTAT CCAGGAGACA TGGTCATATT CAGATGATGG TAACTGGGTG GCATATATTC
  TAGCACAAGC CCTAAAAACA AGGTTTATGG ACCCCATTTT GTCCTTGCTA CTTGGTATGA
  ATATTTACTA AACCAGAGAA AACTGACTTT TGGGTTAAAA GTATGCATTT TTAACTGTCC
  ATAAAGTTCT TTCATTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46789297	NES10634037	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33239869					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789297	NES10634037	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5292914 () rs orientation: forward

Symbol	Name	Function Class
Rr406719	regulatory region 406719	1632 bp distal
Rr573176	regulatory region 573176	1738 bp distal
Rr573177	regulatory region 573177	1222 bp distal
Rr573178	regulatory region 573178	266 bp distal
Rr573179	regulatory region 573179	1219 bp proximal
Zfhx4	zinc finger homeodomain 4	Intron