rs33238963 SNP Detail

Summary

• ID
  rs33238963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:71849502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTA CATTTCCCAG AAGGTGTCTC
  R
  GCAGCGCCGC ACAAACTTCC GGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss46251452	mCV24425485	ABI	CRAMUS_MOUSE	f	SNP	A	A	G			G	A
ss60631381	NES16279489	PERLEGEN	MM_PANEL2	f	SNP				G	A			A		G	G		G
ss145146181	ENSMUSSNP5532528	ENSEMBL	ENSEMBL_Sanger	f	SNP			G				A
ss322703836	CHEV_8_73920757	CHEVERUD	SCREENING_POP	f	SNP									A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs33238963					SNP	A	A	G	G	A	G	A	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60631381	NES16279489	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71849502 () rs orientation: forward

Symbol	Name	Function Class
2310041K03Rik	RIKEN cDNA 2310041K03 gene	83 bp upstream
Babam1	BRISC and BRCA1 A complex member 1	mRNA-UTR
Rr400925	regulatory region 400925	within coordinates
Rr665043	regulatory region 665043	1084 bp distal
Rr665044	regulatory region 665044	829 bp distal
Rr665045	regulatory region 665045	within coordinates
Tssr77853	transcription start site region 77853	within coordinates
Tssr81705	transcription start site region 81705	1037 bp upstream
Tssr81706	transcription start site region 81706	1018 bp upstream
Ushbp1	USH1 protein network component harmonin binding protein 1	1056 bp upstream