rs33237525 SNP Detail

Summary

• ID
  rs33237525
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5291010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTTTAT TTCTGTGTCC
  TGCTCTCTAT AAAGTTATGT TTTCCAAGAC AGGAGCAAAC AAGCGGTGGC TCAGATTTCA
  GCAACTTTCC AAAGTGTGCA GAGTTTTACC ATGATCAGGA AGATATGGAT GAAGATAGTA
  CAAGCAGGTA GATAATCACC AGAGGCTTGT ATGTAGATGG CTTTAAGCAG CATGCCAGCC
  K
  AGCCAGATAC TGACTACTGA GTGTCAAGAA TTCCCAGCAC TTTCCTGCAA AAACTGTTAT
  TTTAAGAGGA GCCAGTAATA TGGCATGAAT ATTCAGTTCA TTCAATTATT GACCTTATAG
  TGTACTCCCC TACCCCCCAT TGATCAGAAA TAACTCCCTC AATTGACAGA ACACTTCATT
  AGAGGCAAAG ACGTATATTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46789261	NES10634025	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33237525					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789261	NES10634025	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5291010 () rs orientation: forward

Symbol	Name	Function Class
Rr406719	regulatory region 406719	within coordinates
Rr573176	regulatory region 573176	within coordinates
Rr573177	regulatory region 573177	332 bp proximal
Rr573178	regulatory region 573178	1081 bp proximal
Zfhx4	zinc finger homeodomain 4	Intron