rs33236898 SNP Detail

Summary

• ID
  rs33236898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155596068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC TGTCCCCAGG CATCCCTTCC
  Y
  CCTCCCACAT CCCCTTTGCC CCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45253920	mCV23301449	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148058400	ENSMUSSNP2392924	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320575284	CHEV_2_155579884	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33236898					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155596068 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12531	CpG island 12531			382 bp distal
Procr	protein C receptor, endothelial			Intron
				Noncoding-Transcript-Variant
Rr568116	regulatory region 568116			1659 bp proximal
Rr568117	regulatory region 568117			1775 bp proximal
Tssr21121	transcription start site region 21121			797 bp upstream
Tssr21122	transcription start site region 21122			836 bp upstream
Tssr21123	transcription start site region 21123			852 bp upstream
Tssr21124	transcription start site region 21124			907 bp upstream