rs33236078 SNP Detail

Summary

• ID
  rs33236078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5289730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTCCTT AACACTTTAT
  TGAAATGAAT GTGATCGCTC TCCTGTATTA GACACTTGTT AGGATCCTTT AGCTACTCTT
  CTAACTGACA GCCCTGTCTT CATCTTATCC AGGATCTCTA GTATACTCAC TAAATATTTT
  TTGTTATTGT TGCTAGAAAT AGGAGAACCC AGGTTAGGCC TTGTATTCAT AAATGAAGAG
  Y
  TTTTCTGTGT CTGTCTAGGA GCTGTCCCCA TAGGCAGTGT AGGGTTTTGG GGGTTTTGTT
  TTGCAGTTTT CCCCCCTCAC TAAAAACATT CTAAGGGTTA AAGACTTGGC CATGGTTCAA
  ACTGAGAAGT GCCCAGGGAA AGTGCATGTG AATATGTACA AGTTTCATGT AATTAGTGCT
  TAATTATATT AACATATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46789243	NES10634019	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33236078					SNP	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789243	NES10634019	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5289730 () rs orientation: forward

Symbol	Name	Function Class
Rr406719	regulatory region 406719	within coordinates
Rr573176	regulatory region 573176	within coordinates
Rr573177	regulatory region 573177	1612 bp proximal
Zfhx4	zinc finger homeodomain 4	Intron