rs33236075 SNP Detail

Summary

• ID
  rs33236075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5289653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTTCTC TAGTTTCTAT
  TTTTACTGTT ATCAAACCAT TTTTATCTCC CAAGGTTTGA CAGTGTCAAT GGTGCAGAAT
  CTTCCTTAAC ACTTTATTGA AATGAATGTG ATCGCTCTCC TGTATTAGAC ACTTGTTAGG
  ATCCTTTAGC TACTCTTCTA ACTGACAGCC CTGTCTTCAT CTTATCCAGG ATCTCTAGTA
  Y
  ACTCACTAAA TATTTTTTGT TATTGTTGCT AGAAATAGGA GAACCCAGGT TAGGCCTTGT
  ATTCATAAAT GAAGAGTTTT TCTGTGTCTG TCTAGGAGCT GTCCCCATAG GCAGTGTAGG
  GTTTTGGGGG TTTTGTTTTG CAGTTTTCCC CCCTCACTAA AAACATTCTA AGGGTTAAAG
  ACTTGGCCAT GGTTCAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	MOLF/EiJ	NZW/LacJ
ss46789240	NES10634018	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	MOLF/EiJ	NZW/LacJ
rs33236075					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789240	NES10634018	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5289653 () rs orientation: forward

Symbol	Name	Function Class
Rr406719	regulatory region 406719	within coordinates
Rr573176	regulatory region 573176	within coordinates
Rr573177	regulatory region 573177	1689 bp proximal
Zfhx4	zinc finger homeodomain 4	Intron