rs33235901 SNP Detail

Summary

• ID
  rs33235901
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121279620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCC ACATCGCCAG CCGCACCCCT
  M
  CACCCCCCGG CCACGTGACC CGGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45253340	mCV22586328	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss147386362	ENSMUSSNP5404606	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320483211	CHEV_2_121274875	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33235901					SNP	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121279620 () rs orientation: forward

Symbol	Name	Function Class
Gm22953	predicted gene, 22953	1531 bp downstream
Gm75262	predicted gene, 75262	within coordinates
Rr397250	regulatory region 397250	within coordinates
Rr563824	regulatory region 563824	845 bp distal
Rr563825	regulatory region 563825	742 bp distal
Rr563826	regulatory region 563826	within coordinates
Rr563827	regulatory region 563827	1057 bp proximal
Serf2	small EDRK-rich factor 2	59 bp upstream
Tssr19771	transcription start site region 19771	223 bp upstream
Tssr19772	transcription start site region 19772	1167 bp upstream
Tssr25936	transcription start site region 25936	1056 bp downstream