rs33233232 SNP Detail

Summary

• ID
  rs33233232
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69418168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG ACCCCAGGGA GGAGGGGTTG
  R
  TGTGGAAAAG GAGTCAACAG GTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45253604	mCV23266169	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss320331729	CHEV_2_69425881	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33233232					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69418168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11710	CpG island 11710	1318 bp distal
Cpgi11711	CpG island 11711	146 bp proximal
Lrp2	low density lipoprotein receptor-related protein 2	1795 bp upstream
Rr558427	regulatory region 558427	1806 bp distal
Rr558428	regulatory region 558428	1269 bp distal
Rr558429	regulatory region 558429	724 bp distal
Rr558430	regulatory region 558430	within coordinates
Tssr24442	transcription start site region 24442	1787 bp upstream