rs33231845 SNP Detail

Summary

• ID
  rs33231845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152498050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aataagtaa ataaaCAACA ACAAAAAAAA
  GCAACTTGAA AAGATAGAGA GAGATGGCTC AATAGACACC TATGTTCAAC CTCCAAAAGC
  CATGtgtatc agtcacggtt gtcaagagga taagaactta ttgaatgaac tgcgggggaa
  R
  gggggggcta gaatggctta taggctgtgg tcaagctagc ctaacaatgg ctgtctacca
  aaggaaggtc caaaaatcca gtagtttttc agtacacaag gctggatgtc tcagctggtc
  ttcagaatcg gccagaatcc tgaagaggta                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45253243	mCV27575974	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss320562940	CHEV_2_152481866	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33231845					SNP	G	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152498050 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	1800 bp upstream
Rr567411	regulatory region 567411	1789 bp distal
Rr567412	regulatory region 567412	1288 bp distal
Rr567413	regulatory region 567413	255 bp distal
Rr567414	regulatory region 567414	1328 bp proximal
Rr567415	regulatory region 567415	1462 bp proximal
Tssr26849	transcription start site region 26849	1871 bp upstream
Tssr26850	transcription start site region 26850	1864 bp upstream
Tssr26851	transcription start site region 26851	1826 bp upstream
Tssr26852	transcription start site region 26852	1797 bp upstream