rs33227308 SNP Detail

Summary

• ID
  rs33227308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156193253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTAGTC ACTGCGGCTG
  GCCAAGAAAG ACCACAGCTT TATTCTTAGA TCCACTGGGC CTTAGGGTAG AATTCCAGAG
  AGGAGTAAAT CGCGGTGGTG CAAAGAATGC TGAGTTGTCT GACCAGCTCT ACCAGATCAG
  AGAAACTGAG GTCATGAGGA AGTGAGGAAG GCCTAGCAGA GAGCAGGGTG AAAAAAACAG
  R
  ACCAAGCCTG ACAGATACTC TCTAATCTTT GTTCAAAACA GAGCCCTGGT GCACACAGTT
  TTGCTCTTTT CCAGGGGCGG TCTAGTGGTT CTACCTCACT TCAGAGAAGA TGTAAGCTTT
  CAAAAAGTAC AGTGCCAGGG CTGGTGAGAT GGCTCAGTGG GTAAGAGCAC TGACTGCTCT
  TCTGAAAGTC CTGAGTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46787946	NES10985238	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33227308					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46787946	NES10985238	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156193253 () rs orientation: forward

Symbol	Name	Function Class
9430015G10Rik	RIKEN cDNA 9430015G10 gene	1202 bp upstream
Gm69135	predicted gene, 69135	within coordinates
Rr398931	regulatory region 398931	944 bp upstream
Rr606676	regulatory region 606676	within coordinates
Rr606677	regulatory region 606677	245 bp proximal
Rr606678	regulatory region 606678	329 bp proximal
Rr606679	regulatory region 606679	932 bp proximal
Rr606680	regulatory region 606680	1094 bp proximal
Rr606681	regulatory region 606681	1214 bp proximal
Tssr40790	transcription start site region 40790	1175 bp upstream
Tssr40791	transcription start site region 40791	1217 bp upstream