rs33224586 SNP Detail

Summary

• ID
  rs33224586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151865988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGCTGTC CTAGTCTTAC
  AGAATCTTAT TCTGGACATC TCCTGAAGTC ACGCAGCAAG TCAGGAACCC ATCTTTCTCC
  TCACCCCTCT CTGAAGCCTG GGAAGTAGAC TCAGGAATGC TCACAGTACC CTGGAATCAC
  TCACTACGCT GTGTCCCGGG CCCAGAGGAA GAAGGCTGCC AAGCACGAAG CTTTTCAACA
  Y
  CTGATAGTAC TGGCTCACTC GTGTTTCTAA TGTTACCTGG TCAGGGAGGG GGTGCTTGCT
  TTATTCCTGG TGGACAGCTA CCTCTGTCTG CCCCGTGTCT GCCATTCTGT CATCACAGGG
  GATCTTGGTG GATGCTAGTC TCTGGCCAGC CTTGAGTCTT TGGCTCTTTG CTTGGAGATC
  AGTATCGCTG GAGATCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45252598	mCV23078902	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147960924	ENSMUSSNP2883828	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320561844	CHEV_2_151849804	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33224586					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151865988 () rs orientation: forward

Symbol	Name	Function Class
Gm75398	predicted gene, 75398	within coordinates
Gm75402	predicted gene, 75402	within coordinates
Rr374074	regulatory region 374074	within coordinates
Rr567261	regulatory region 567261	1851 bp distal
Rr567262	regulatory region 567262	1655 bp distal
Rr567263	regulatory region 567263	336 bp proximal
Rr567264	regulatory region 567264	533 bp proximal