rs33224478 SNP Detail

Summary

• ID
  rs33224478
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97295961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATG CTTGGGAGAC TTAAAAATGA
  S
  TGACTGTAGC TAATGGAAAG AGTTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45252267	mCV23693161	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	G
ss146995015	ENSMUSSNP2213420	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		G
ss320413812	CHEV_2_97305773	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33224478					SNP	G	C	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97295961 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11965	CpG island 11965			951 bp proximal
Gm54117	predicted gene, 54117			within coordinates
Gm75348	predicted gene, 75348			853 bp upstream
Lrrc4c	leucine rich repeat containing 4C			Intron
				mRNA-UTR
Rr561447	regulatory region 561447			363 bp proximal
Rr561448	regulatory region 561448			1551 bp proximal
Tssr19016	transcription start site region 19016			831 bp upstream
Tssr19017	transcription start site region 19017			1860 bp upstream
Tssr19018	transcription start site region 19018			1923 bp upstream
Tssr19019	transcription start site region 19019			1959 bp upstream