rs33223445 SNP Detail

Summary

• ID
  rs33223445
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156148649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGT GTGGCAGAAA CCCCCACATT
  W
  GTCTGATTTG GTGGCGTTGG CCTGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46786908	NES10987453	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	A		A	A	A	A	T
ss148125299	ENSMUSSNP3112781	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33223445					SNP	T	T	T	A	A	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786908	NES10987453	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156148649 () rs orientation: forward

Symbol	Name	Function Class
Gm52714	predicted gene, 52714	82 bp upstream
Rr377474	regulatory region 377474	within coordinates
Rr606657	regulatory region 606657	within coordinates
Rr606658	regulatory region 606658	165 bp proximal
Tssr40789	transcription start site region 40789	147 bp upstream