rs33222573 SNP Detail

Summary

• ID
  rs33222573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156148595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCACAA AACACACCAA
  GGCAGACTTC TGCCAGCTGC AGTGGGTGTC AGAATCTCTG AAGCCAGACA AAGGTTCGGT
  CTGGCCCACC TGCTGGGCAG GGCAGCGTTA CCATGGCTGC AGAAGAGGGA TAGTGGCTGG
  GAATCTGTAA GGAAGCTGCT CTCCGGGGAC CTTAAAGGCC TGGCTGCTCC CCTTTGTAGT
  Y
  TCTCCTCAGA AGAAGGACTA GTCTGAGAGG GGTGTGGCAG AAACCCCCAC ATTAGTCTGA
  TTTGGTGGCG TTGGCCTGAG GGAACCCAGC CCCCAGTCCC TCAACCCTGG CCAGGCTGAG
  GCCTCCTTGG GTGGGGCAGA CACAACAAAG GCCCATTGTG CTGGCAGCCA GGTACTTCCT
  GCATGGCTGC CAGCCATGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46786905	NES10987452	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	T		C
ss321445039	CHEV_4_155438247	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33222573					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786905	NES10987452	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156148595 () rs orientation: forward

Symbol	Name	Function Class
Gm52714	predicted gene, 52714	136 bp upstream
Rr377474	regulatory region 377474	within coordinates
Rr606657	regulatory region 606657	within coordinates
Rr606658	regulatory region 606658	219 bp proximal
Tssr40789	transcription start site region 40789	201 bp upstream