rs33220215 SNP Detail

Summary

• ID
  rs33220215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156146927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGGTACAT AAGCCTTTGT
  CTCAATTTGG CACAGGATGA GTGAGCACCC TAAATGCCAC ATGAACGCAG ATATCTTCTG
  ATGATATTGA AAGGACTGAG CCTGGATGAG AAGAAGATGA TCTGAGAGGC TCACCCGGTT
  CCTGCTCACA TGCACAGGTA TCTGACCCTA TCTCTAGGTG GGATCCTAGA TAGATCGTTC
  Y
  TTCCGTCATC AAGAGCTGTG TGCTACCAGG ATGAACAGAG AGATTCGGTC AGTCCTAGGT
  CAGAATGCTG AAGATCTAGT GTAACCTCCC ACTCTTTCCC TCTCATGCAC AGCAGAGGTT
  CAATATAGAC TGAGCGTCAG AAAGAAGGAG CACTCTCAAA CTGTAAACTC AGCTCTCTTC
  CTTTCTTGTA GATGTAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46786866	NES10987593	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	C		T
ss321445019	CHEV_4_155436579	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33220215					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786866	NES10987593	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156146927 () rs orientation: forward

Symbol	Name	Function Class
Gm52714	predicted gene, 52714	1804 bp upstream
Rr377474	regulatory region 377474	1418 bp upstream
Rr606657	regulatory region 606657	1402 bp proximal
Rr606658	regulatory region 606658	1887 bp proximal
Tssr40789	transcription start site region 40789	1869 bp upstream