rs33219436 SNP Detail

Summary

• ID
  rs33219436
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156146510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGAAGA ATAGGTTTAG
  ACACTGTCTG CCCTGACTGG GTTTTTCCTG AGTGGATGAG CTTGACAGCA GAGGCACTCC
  TTGCCAAGGT GGAGGAGACT TCCCCAGAGG CCTCTGGCAG GAACATAGCA GCCTGTCTCC
  CTGTCCTCTG CATCTGCGAT ACACTTATGT CCAGCCATTC CTTTGTCTAC CCATTGTCTG
  R
  TACAGGGGAT GCTGCACCAC CCAGCCTCAG TGAAAGAGTA TAAATACTGA CTGCATTTGT
  ACCCAAAGGC CTCTTCTGTG TCTATGGGCA CAGTCCTGAG CCCCATTTTA TAATCGATCC
  AGCTCTGAAA GCTCTAATCT CTGCTCAGAT GCTCCAGTTA AAGTCTATTG AGGCCATTTC
  TGTGGCATGT CCTGGGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46786857	NES10987590	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	A	G		A
ss321445016	CHEV_4_155436162	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33219436					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786857	NES10987590	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156146510 () rs orientation: forward

Symbol	Name	Function Class
Rr377474	regulatory region 377474	1835 bp upstream
Rr606656	regulatory region 606656	1742 bp distal
Rr606657	regulatory region 606657	1819 bp proximal
Tssr40788	transcription start site region 40788	1985 bp downstream