rs33218897 SNP Detail

Summary

• ID
  rs33218897
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149333993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCA TTCCTTTGAT GGAAAATAGC
  W
  TAGTGGTTTG AAATAGTTTA CCAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45751545	mCV23838567	ABI	CRAMUS_MOUSE	f	SNP		T	A					T	T
ss51207791	NES13811528	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	T	A		T	A	T	A	A	T	A	A
ss144701041	ENSMUSSNP1402619	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33218897					SNP	T	T	A	T	A	T	A	T	T	A	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51207791	NES13811528	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149333993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17095	CpG island 17095	1078 bp proximal
Gm20488	predicted gene 20488	within coordinates
Medag	mesenteric estrogen dependent adipogenesis	1221 bp upstream
Rr625496	regulatory region 625496	731 bp proximal
Tssr49905	transcription start site region 49905	1263 bp upstream
Tssr49906	transcription start site region 49906	1570 bp upstream