rs33218530 SNP Detail

Summary

• ID
  rs33218530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156146360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGCTT AGTTTTGATG
  TCTCTAGCTA TCTGCAAAGT ACCAAAGAGC TGGGACTGGA GAAGACGTGT AGCGTATTAG
  CCATAAGGGA TACTTGACAT ACAGGTCAAG GCCTAAGGGC ACAGCGTGAC TGGGACTAGC
  TCTGTGCTCT GGTAGGAAGA ATAGGTTTAG ACACTGTCTG CCCTGACTGG GTTTTTCCTG
  R
  GTGGATGAGC TTGACAGCAG AGGCACTCCT TGCCAAGGTG GAGGAGACTT CCCCAGAGGC
  CTCTGGCAGG AACATAGCAG CCTGTCTCCC TGTCCTCTGC ATCTGCGATA CACTTATGTC
  CAGCCATTCC TTTGTCTACC CATTGTCTGA TACAGGGGAT GCTGCACCAC CCAGCCTCAG
  TGAAAGAGTA TAAATACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46786851	NES10987588	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		A	A	G		A
ss321445015	CHEV_4_155436012	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33218530					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786851	NES10987588	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156146360 () rs orientation: forward

Symbol	Name	Function Class
Rr377474	regulatory region 377474	1985 bp upstream
Rr606656	regulatory region 606656	1592 bp distal
Rr606657	regulatory region 606657	1969 bp proximal
Tssr40788	transcription start site region 40788	1835 bp downstream