rs33217899 SNP Detail

Summary

• ID
  rs33217899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169507484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACTCACACA CTCACATATA
  Y
  ACACTCATAC ACTCACACAC ACATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45251907	mCV23016953	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148289179	ENSMUSSNP2630848	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320613649	CHEV_2_169491064	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33217899					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169507484 () rs orientation: forward

Symbol	Name	Function Class
Gm34344	predicted gene, 34344	46 bp downstream
Rr571229	regulatory region 571229	862 bp distal
Rr571230	regulatory region 571230	655 bp proximal
Tshz2	teashirt zinc finger family member 2	Intron
Tssr21905	transcription start site region 21905	626 bp downstream